Help With Cold Air!

I just put an injen cold air intake on my civic a few weeks ago, and after the rain we got here in NY yesterday and today, i began to get worried about possible water in the filter. I got home a few min ago, looked underneath, the filter looked a lil wet so i disconnected the tubes and sure enough there was a little condensation on the inside. Is this something to be worried about? Should i pull the lower half of the intake and put the filter up top until theres nice weather? I called injen and they said that the filter pretty much is ok unless u submerge it... well... maybe theyre wrong... who knows... i sure as hell dont... any info ASAP would be GREATLY appreciated. Thanks

Derek Winn